As the leaves begin to dance in hues of gold and crimson, the thought of cozy desserts becomes oh-so-tempting. That’s where my Apple Crumble Cupcakes come in, each bite filled with tender apple pieces and topped with a crunchy crumble that echoes the beloved classic crumble. These cupcakes are not only a delightful addition to any fall gathering, but they also cater to your dietary needs, with easy adaptations for both gluten-free and vegan diets. With a simple prep process and the ability to whip up a batch in no time, they promise to bring comfort and joy to your kitchen. Isn’t it time to treat yourself and your loved ones to a taste of autumn?

Why Make Apple Crumble Cupcakes?
Irresistible Fall Flavor: Each cupcake bursts with warm, spiced apple goodness, perfectly embodying the essence of autumn.
Versatile Options: Easily adapt this recipe for gluten-free or vegan diners without compromising on taste.
Simple Preparation: With a straightforward process, from mixing to baking, you’ll have these delightful treats ready in no time.
Crowd-Pleasing Appeal: Perfect for gatherings, these cupcakes will impress friends and family alike, bringing everyone together over a shared love of dessert.
Comforting Texture: Enjoy a fantastic combination of light, fluffy cake paired with the satisfying crunch of a crumble topping—just like a traditional apple crumble! Treat yourself today with other delicious fall favorites like Apple Cider Whoopie or Apple Crumb Cake.
Apple Crumble Cupcake Ingredients
-
For the Cupcake Batter
• All-Purpose Flour – Provides structure and stability; substitute gluten-free flour blend for a gluten-free version.
• Light Brown Sugar – Adds sweetness and rich flavor; can be replaced with granulated sugar for a milder taste.
• Ground Cinnamon – Infuses warmth and spice; use pumpkin pie spice for an extra kick.
• Ground Nutmeg – Enhances the flavor profile; can be omitted or replaced with allspice.
• Cold Unsalted Butter – Creates a crumbly texture in the topping; replace with vegan butter for a dairy-free option.
• Granulated Sugar – Adds sweetness to the apple filling; adjust according to the sweetness of the apples.
• Lemon Juice – Balances sweetness and enhances flavor; essential for freshness with no substitute.
• Large Eggs – Provides moisture and structure; substitute with flaxseed meal + water for a vegan option.
• Sour Cream/Plain Yogurt – Adds richness and moisture; use vegan yogurt for a plant-based alternative.
• Milk – Ensures a moist texture; plant-based milk (like almond or oat milk) is a great substitute.
• Baking Powder & Baking Soda – Essential leavening agents for cupcake rise; check for freshness for best results.
• Salt – Enhances overall flavor; essential for flavor concentration. -
For the Apple Filling
• Apples (Honeycrisp, Gala, or Fuji) – Adds natural sweetness and moisture; use any favorite apple variety for unique flavors. -
For the Crumble Topping
• Cold Unsalted Butter – Creates a delightful, crumbly texture; swap for vegan butter if needed.
• All-Purpose Flour – Forms the base of the crumble; can also be substituted with gluten-free flour blend.
• Light Brown Sugar – Adds flavor and sweetness to the topping; granulated sugar can be an alternative.
• Ground Cinnamon – Produces a warm, comforting flavor; feel free to add other spices for a twist. -
Optional Garnishes
• Caramel Sauce – Adds a sweet drizzle; can be easily omitted if you prefer a simpler dessert.
• Powdered Sugar – For dusting the top, giving a lovely finish; this step is not necessary but enhances presentation.
These Apple Crumble Cupcake ingredients will help you create the perfect cozy dessert that captures the spirit of fall!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare the Crumble Topping
In a mixing bowl, whisk together the flour, brown sugar, ground cinnamon, and nutmeg until combined. Cut in the cold unsalted butter using a pastry cutter, fork, or your fingers until the mixture resembles coarse crumbs. Once ready, refrigerate this topping while you prepare the cupcake batter to ensure it stays crumbly during baking.
Step 2: Make the Apple Filling
In a medium bowl, combine the diced apples, granulated sugar, lemon juice, ground cinnamon, nutmeg, and a small amount of flour. Toss until the apples are evenly coated. Set this mixture aside to allow the flavors to meld, adding even more depth to your Apple Crumble Cupcakes when it bakes.
Step 3: Prepare the Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large bowl, whisk the all-purpose flour, baking powder, baking soda, and salt. In another bowl, cream the cold butter and brown sugar together until light and fluffy, about 3-4 minutes, ensuring a tender batter for your cupcakes.
Step 4: Combine Wet Ingredients
Add the eggs one at a time to the creamed mixture, mixing well after each addition. Stir in the vanilla extract and then alternate adding the dry flour mixture with sour cream (or milk), starting and ending with the dry ingredients. Mix until just combined, being careful not to overmix, as this keeps the cupcakes fluffy.
Step 5: Assemble and Bake
Scoop the prepared batter into the lined muffin tin, filling each cup about halfway. Spoon the apple filling generously on top of the batter, and finally, sprinkle the chilled crumble topping over the apples, covering them well. Bake in the preheated oven for 20-25 minutes, or until golden brown and a toothpick inserted into the center comes out clean.
Step 6: Garnish (Optional)
Allow the Apple Crumble Cupcakes to cool in the tin for about 5 minutes before transferring to a wire rack. Once completely cool, you can drizzle with caramel sauce and dust with powdered sugar for an extra special touch. Enjoy these delightful fall treats with family and friends!

Expert Tips for Apple Crumble Cupcakes
-
Fresh Ingredients: Always use fresh apples to maximize flavor and texture; avoid soft or mushy apples that may compromise the taste.
-
Don’t Overmix: Gently mix your batter until just combined. Overmixing can lead to tough cupcakes instead of the desired tender texture.
-
Chill the Topping: Keep your crumble topping chilled before baking. This helps achieve that perfect crunchy texture that contrasts beautifully with the moist cupcake.
-
Customize to Taste: Feel free to swap out spices and apple varieties based on your preferences. Experimenting can lead to wonderful flavor discoveries in your Apple Crumble Cupcakes!
-
Check Doneness: Use a toothpick inserted in the center to check if they are done; it should come out clean. Baking times may vary, so keep a close eye on them!
How to Store and Freeze Apple Crumble Cupcakes
Airtight Container: Store Apple Crumble Cupcakes in an airtight container at room temperature for up to 3 days to maintain their moisture and freshness.
Refrigeration: For longer storage, keep them in the fridge for up to a week. Make sure to seal them properly to prevent drying out.
Freezing: To freeze, place cooled cupcakes in a single layer in a freezer-safe bag or container. They can be frozen for up to 2 months.
Thawing: When ready to enjoy, thaw at room temperature for a few hours or overnight in the refrigerator. Warm them slightly in the oven for the best experience!
What to Serve with Apple Crumble Cupcakes?
Indulge in the heartwarming flavors of fall by pairing these delightful treats with complementary side dishes and drinks.
-
Vanilla Ice Cream: A scoop of creamy vanilla ice cream perfectly contrasts the warm spices of the cupcakes, enhancing the overall dessert experience. Imagine that luscious scoop melting into the sweet crumble topping, creating a heavenly combination.
-
Caramel Drizzle: Drizzle some rich caramel sauce over each cupcake for an extra layer of sweetness that truly elevates this autumn dessert. The gooey texture pairs beautifully with the crunchy topping, bringing a delightful contrast.
-
Hot Apple Cider: Sip on warm apple cider, spiced with cinnamon and cloves, to deep-dive into apple goodness. Its cozy warmth makes it a perfect companion for your sweet indulgence, evoking memories of fall’s embrace.
-
Pecans or Walnuts: Offer a bowl of toasted pecans or walnuts for added crunch and nutty flavor. These nuts can also be sprinkled on top of the cupcakes to introduce a new texture with every bite.
-
Pumpkin Soup: A warm bowl of hearty pumpkin soup serves as a savory counterpoint. The rich, creamy texture of the soup acts as a palate cleanser between bites, balancing out the sweetness of the cupcakes.
-
Chai Tea: Serve these cupcakes alongside a steaming cup of spiced chai tea, which brings aromatic notes of cardamom and ginger that harmonize beautifully with the apple crumble flavor profile.
-
Whipped Cream: A dollop of freshly whipped cream adds a light, airy layer that complements the richness of the cupcakes. It’s a simple addition that brings an element of elegance to your dessert presentation.
-
Cheesecake Bites: For something extra special, mini cheesecake bites offer a tangy contrast to the sweetness of the cupcakes. Their creamy texture presents a delightful twist at any gathering.
Make Ahead Options
Apple Crumble Cupcakes are a fantastic option for meal prep, perfectly suited for busy home cooks! You can make the crumble topping and store it in the refrigerator up to 24 hours in advance to ensure it stays fresh and crumbly. The apple filling can also be prepped ahead; simply mix the diced apples with sugar and spices and refrigerate for up to 3 days. When you’re ready to bake, just combine the ingredients as instructed and top with the prepared crumble. This way, you’ll save time on hectic days while still enjoying delicious, homemade cupcakes that taste just as delightful!
Apple Crumble Cupcakes Variations & Substitutions
Feel free to tailor these Apple Crumble Cupcakes to suit your taste or dietary needs—there’s a world of options!
- Gluten-Free: Use a gluten-free flour blend instead of all-purpose flour to cater to gluten sensitivities.
- Vegan: Replace eggs with flaxseed meal and water, and swap out dairy yogurt and butter for plant-based alternatives for a delicious vegan treat.
- Play with Apples: Experiment with different apple varieties like tart Granny Smith or sweet Pink Lady for unique flavor profiles. The world of apples is your playground!
- Spice It Up: Add a pinch of ground ginger or a dash of cloves to your crumble topping for a deeper flavor that brings warmth to every bite.
- Nutty Crunch: Fold in chopped walnuts or pecans into the crumble for an added texture and nutty flavor that enhances the cupcake experience.
- Frosting Lovers: Consider adding a swirl of cream cheese frosting on top for an extra layer of decadence, turning your cupcakes into a more indulgent treat.
- Sweet & Smooth: If you’re a fan of caramel, drizzling some over the warm cupcakes will create an irresistible gooey sweetness.
- Mini Versions: Bake mini cupcakes instead for bite-sized treats that are perfect for sharing or for gatherings, allowing everyone to indulge without guilt.
If you’re looking to explore more apple-inspired delights after these cupcakes, why not try an Apple Cider Pound or perhaps whip up some Apple Cinnamon Streusel muffins for breakfast? The options are endless!

Apple Crumble Cupcakes Recipe FAQs
Are there specific apples that work best for this recipe?
Absolutely! I recommend using Honeycrisp, Gala, or Fuji apples for their sweet taste and firm texture. These varieties hold up well during baking, contributing a delightful flavor. However, feel free to explore other favorite apples for distinctive flavors in your Apple Crumble Cupcakes!
How should I store leftover cupcakes?
You can store Apple Crumble Cupcakes in an airtight container at room temperature for up to 3 days. If you want them to last longer, refrigerate them for up to a week. Just make sure to seal them well to keep them moist!
Can I freeze Apple Crumble Cupcakes? If so, how?
Yes! To freeze, allow the cupcakes to cool completely first. Then, place them in a single layer in a freezer-safe bag or container, separating layers with parchment paper. They can be stored in the freezer for up to 2 months. When you’re ready to enjoy, simply thaw them at room temperature or in the refrigerator overnight. For a warm treat, pop them in the oven for a few minutes!
What if my crumble topping doesn’t get crunchy?
To ensure a crunchy topping, make sure your butter is cold when mixing it into the dry ingredients—it helps create those delightful crumbs. Also, if the crumble is too wet, it may not crisp up properly. If your topping comes out soggy, try increasing the baking time slightly or cooling them on a wire rack.
Can these cupcakes be made vegan or gluten-free?
Very! For a gluten-free version, simply substitute the all-purpose flour with a gluten-free flour blend. To make them vegan, replace the eggs with a flaxseed meal mixed with water (1 tablespoon of flaxseed meal + 2.5 tablespoons of water per egg), and use plant-based yogurt and milk. Both adaptations will still yield delicious Apple Crumble Cupcakes that everyone can enjoy!
Is it necessary to use lemon juice in the apple filling?
Yes! Lemon juice is essential as it balances the sweetness of the apples and enhances their flavor. It also prevents the apples from browning. I highly recommend not skipping this ingredient to achieve the best flavor profile in your Apple Crumble Cupcakes.

Warm and Cozy Apple Crumble Cupcakes You'll Love This Fall
Ingredients
Equipment
Method
- Prepare the Crumble Topping by whisking together the flour, brown sugar, ground cinnamon, and nutmeg. Cut in the cold butter until crumbly and refrigerate.
- Make the Apple Filling by combining the diced apples, granulated sugar, lemon juice, ground cinnamon, nutmeg, and a small amount of flour. Toss to coat and set aside.
- Prepare the Cupcake Batter by preheating the oven to 350°F (175°C) and lining a muffin tin. Whisk the flour, baking powder, baking soda, and salt in one bowl, and cream the butter and brown sugar in another until fluffy.
- Combine Wet Ingredients by adding eggs one at a time to the creamed mixture. Stir in vanilla and alternate adding the dry mixture with sour cream, starting and ending with dry ingredients.
- Assemble and Bake by scooping batter into the muffin tin, adding apple filling on top, and sprinkling with crumble topping. Bake for 20-25 minutes.
- Garnish (Optional) by allowing the cupcakes to cool and adding caramel sauce and powdered sugar if desired.

Leave a Reply