The aroma of melting chocolate with a touch of cherry sweetness transports me to a cozy kitchen brimming with warmth and joy. Allow me to introduce you to my Ultimate Chocolate Cherry Thumbprint Cookies, a delightful way to satisfy your chocolate cravings while elevating your baking game! These cookies are a dream come true, with a fudgy texture and a luscious cherry ganache that makes them ideal for romantic occasions like Valentine’s Day or simply to treat yourself on a Tuesday. Not only are they easy to whip up, but their impressive look and divine taste will also make you the star of any gathering. Ready to elevate your dessert game with these irresistible treats? Let’s dive in!

Why Are Chocolate Cherry Cookies Irresistible?
Decadent Delight: These cookies are the perfect fusion of rich chocolate and sweet cherry, creating a taste that’s simply unforgettable. Beautifully Unique: Their charming thumbprint design makes them stand out on any dessert table. Easy to Make: With minimal effort, you can impress your guests with these beautiful cookies—just like my Chocolate Marshmallow Swirl Cookies! Perfect for Sharing: Ideal for romantic occasions or gatherings, they are sure to bring smiles to friends and family alike. Versatile Treat: Swap out the cherry ganache for different fillings like raspberry jam or try them paired with vanilla ice cream for an extra treat!
Chocolate Cherry Cookies Ingredients
• Dive into the rich flavors of Chocolate Cherry Cookies with these carefully selected ingredients!
For the Cookie Base
- All-Purpose Flour – Provides structure for the cookies; gluten-free flour works as a substitute.
- Dutch-Process Cocoa Powder – Intensifies the chocolate flavor; unsweetened cocoa powder can be used in a pinch.
- Baking Powder – Ensures the cookies rise slightly for the perfect texture; always check for freshness.
- Sea Salt – Balances sweetness and enhances flavors; kosher salt can be a great alternative.
- Unsalted Butter (softened) – Creates a tender, chewy texture; margarine can be swapped if needed.
- Light Brown Sugar – Adds moisture with a hint of caramel; dark brown sugar will enrich the flavor.
- Granulated White Sugar – Sweetens the cookies nicely; coconut sugar can offer a lower-glycemic option.
- Egg Yolks (room temperature) – Enhances richness and moisture; for a vegan alternative, try a flax egg or applesauce.
- Vanilla Extract – Adds depth to the flavor; pure vanilla extract is ideal for the best results.
For the Chocolate Cherry Ganache
- Chopped Chocolate (Endangered Species Chocolate recommended) – Forms the base of a rich ganache; any high-quality dark chocolate can work.
- Heavy Cream – Creates a luxuriously smooth ganache texture; use coconut cream for a dairy-free version.
- Cherry Preserves – Infuses the ganache with a delightful cherry flavor; homemade preserves also make a great substitute.
Step‑by‑Step Instructions for Chocolate Cherry Cookies
Step 1: Prepare the Dry Ingredients
In a medium bowl, whisk together 1 ¾ cups of all-purpose flour, ¾ cup of Dutch-process cocoa powder, 1 teaspoon of baking powder, and ½ teaspoon of sea salt until well combined. This will ensure an even distribution of the leavening agent and cocoa, which is crucial for the texture and flavor of your chocolate cherry cookies. Set this dry mixture aside while you focus on the next step.
Step 2: Cream the Butter and Sugars
With an electric mixer, cream together ½ cup of softened unsalted butter, ½ cup of light brown sugar, and ¼ cup of granulated white sugar in a large bowl until the mixture becomes light and fluffy, approximately 3–5 minutes. This process incorporates air into the butter, which is key for achieving a soft, chewy cookie texture. You’ll know it’s ready when it turns a pale yellow color.
Step 3: Incorporate the Egg Yolks and Vanilla
Add 2 room temperature egg yolks and 1 teaspoon of vanilla extract to the butter and sugar mixture. Mix on medium speed until fully combined, scraping down the sides of the bowl as needed to ensure everything is well blended. This addition adds richness to your chocolate cherry cookies, enhancing both flavor and moisture.
Step 4: Combine Dry and Wet Ingredients
Gradually blend the dry mixture into the wet ingredients using a spatula or the mixer on low speed, mixing until just combined. Be careful not to overmix, as this can lead to tough cookies. As you combine, you should see the dough become smooth and slightly sticky, rich in chocolatey goodness—perfect for your thumbprint cookies!
Step 5: Chill and Shape the Dough
Scoop the dough into 32 equal-sized balls, about 1 inch in diameter, and place them on a lined baking sheet. Using a teaspoon, make a small indent in the center of each ball, ensuring enough space for the chocolate cherry filling. Chill the shaped dough in the refrigerator for at least 1 hour to firm up, which will help the cookies maintain their shape while baking.
Step 6: Bake the Cookies
Preheat your oven to 350°F (175°C) while waiting for the dough to chill. Arrange the chilled cookie dough balls on a parchment-lined baking sheet, spacing them about 2 inches apart. Bake for 10-12 minutes, until the edges look slightly set but the centers remain soft. Press the indents again with the teaspoon immediately after baking to create perfect little pockets for your ganache.
Step 7: Cool the Cookies
Once baked, remove the cookies from the oven and allow them to cool on the baking sheet for about 5 minutes. This time lets them firm up just enough for easy handling. Afterward, transfer the cookies to a wire rack to cool completely, where they’ll develop their delightful chewy texture.
Step 8: Prepare the Ganache
For the luscious chocolate cherry ganache, heat ½ cup of heavy cream in a small saucepan over medium heat until just simmering—not boiling. Pour the hot cream over 6 ounces of chopped chocolate in a bowl, letting it sit for a minute to melt, then stir to achieve a smooth consistency. Incorporate 2 tablespoons of cherry preserves into the ganache for a delicious burst of flavor that perfectly complements your chocolate cherry cookies.
Step 9: Fill the Cookie Centers
Once the cookies are cool, carefully spoon the ganache into the indents of each cookie, allowing it to fill generously. Don’t be shy—these fudgy chocolate cherry cookies deserve a delightful ganache center! Place the filled cookies in the refrigerator for a few minutes to let the ganache set before serving, ensuring a perfectly gooey texture when you take your first bite.

Storage Tips for Chocolate Cherry Cookies
Room Temperature: Store cookies in an airtight container at room temperature for up to 3 days to maintain their freshness and chewy texture.
Fridge: If you prefer your cookies chilled, they can be kept in the fridge for up to 5 days, though they may lose some of their soft, fudgy texture.
Freezer: Freeze chocolate cherry cookies in an airtight container or freezer bag for up to 2 weeks. When ready to enjoy, simply thaw them at room temperature or warm them in the microwave for a few seconds.
Reheating: For the best experience, reheat the cookies in a preheated oven at 350°F (175°C) for 5–7 minutes to restore their delightful gooeyness before serving.
Chocolate Cherry Cookies Variations & Substitutions
Feel free to get creative with these chocolate cherry cookies and make them your own!
- Dairy-Free: Use coconut cream and dairy-free chocolate to create a delicious, allergy-friendly ganache.
- Gluten-Free: Substitute all-purpose flour with a 1:1 gluten-free flour blend for everyone to enjoy!
- Nutty Crunch: Fold in chopped walnuts or almonds into the cookie dough for a delightful crunch and texture.
- Different Jams: Swap the cherry preserves with raspberry or strawberry jam for a fruity twist that compliments chocolate beautifully. You can really infuse your cookies with a burst of flavor—so many options!
- Spicy Kick: Add a pinch of cayenne pepper or chili powder to the dough for a surprising heat that pairs wonderfully with the chocolate.
- Mini Cookies: Shape the dough into smaller balls for bite-sized cookies perfect for sharing at parties or tea time. This makes them even more fun and adorable!
- Different Chocolates: Switch out dark chocolate for milk or white chocolate for the ganache, catering to your personal preference or guest’s tastes.
- Flavor Infusion: Experiment with flavored extracts like almond or hazelnut instead of vanilla for a unique twist that makes these cookies stand out.
No matter the variation you choose, don’t forget to check out my Chocolate Oat Cookies or White Chocolate Halloween recipes to inspire even more sweet creations!
Expert Tips for Chocolate Cherry Cookies
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Chill the Dough: Make sure to chill the dough for at least an hour. This helps the cookies maintain their shape during baking, resulting in perfectly fudgy chocolate cherry cookies.
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Accurate Measurements: For the best texture, spoon flour into the measuring cup instead of scooping. Scooping can lead to too much flour, making the cookies dry.
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Press Indents Again: Don’t forget to press the indents into the cookies right after baking. This ensures a nice, deep cavity for the chocolate cherry ganache.
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Quality Ingredients: Use high-quality chocolate for the ganache. A good chocolate will elevate the flavor of your fudgy chocolate cherry cookies significantly.
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Experiment with Flavors: Feel free to swap cherry preserves for other fruit flavors in the ganache. Raspberry or even orange marmalade can add a unique twist to your cookies!
Make Ahead Options
These Chocolate Cherry Cookies are perfect for meal prep enthusiasts! You can prepare the cookie dough up to 24 hours in advance; simply shape the dough into balls and refrigerate. This chilling step helps maintain their shape while baking, ensuring that each cookie has the perfect fudgy texture. Additionally, you can make the cherry ganache up to 3 days ahead; just store it in an airtight container in the fridge. When you’re ready to bake, simply scoop the chilled dough onto a baking sheet, bake for 10-12 minutes, and fill with the ganache after cooling. Enjoy the convenience of delicious cookies with minimal effort, ready to impress at any gathering!
What to Serve with Ultimate Chocolate Cherry Thumbprint Cookies
Delight your taste buds and create a memorable meal by pairing these sumptuous cookies with delicious complementary dishes!
- Vanilla Ice Cream: A scoop of creamy vanilla ice cream creates a delightful contrast with the rich chocolate cookies, enhancing the indulgence with each bite.
- Fresh Berries: The tartness of strawberries or raspberries adds freshness and bright, fruity notes that balance the sweetness of the cookies. Toss them with a sprinkle of sugar for extra sweetness!
- Chocolate Fondue: Dip pieces of the cookies into warm chocolate fondue for a truly decadent experience. The molten chocolate combines beautifully with the cherry ganache.
- Coffee or Espresso: A warm cup of coffee or espresso wakes up the flavors of the cookies, making your dessert experience feel richer and more luxurious. The caffeine kick complements chocolate perfectly!
- Chocolate Cream Cheese Frosting: Spread some leftover frosting on a cookie for a decadent topping—make your dessert even more luxurious and inviting.
- Whipped Cream: Top the cookies with a dollop of freshly whipped cream. Light and airy, it enhances the cookies without overpowering their rich flavors.
- Chilled Rosé Wine: Elevate your dessert table with a glass of chilled rosé wine. Its refreshing character and subtle fruitiness pair exquisitely with the chocolate and cherry layers.
- Chocolate Mint Tea: Sip on a warm cup of chocolate mint tea for a cozy, soothing experience that enhances the essence of your chocolate cherry cookies.
- Peppermint Bark: A side of peppermint bark introduces a delightful crunch and a minty flavor that beautifully complements the richness of the cookies.
- Cherry Vanilla Soda: For a fun twist, pair the cookies with a sparkling cherry vanilla soda. The fizzy sweetness cuts through the fudginess of the treats, making each bite feel light yet satisfying.

Chocolate Cherry Cookies Recipe FAQs
What type of cherries should I use for the ganache?
Absolutely! For the ganache, I recommend using cherry preserves for the sweetest result. If you prefer fresh cherries, ensure they’re ripe and sweet, or opt for frozen cherries, thawed and drained, which can also provide a delightful flavor.
How should I store my chocolate cherry cookies?
You can store your chocolate cherry cookies in an airtight container at room temperature for up to 3 days. If you want them to last a bit longer, keep them in the fridge for up to 5 days. To enjoy their chewy texture, simply warm them slightly before serving.
Can I freeze these chocolate cherry cookies?
Very! To freeze, place chocolate cherry cookies in a single layer on a baking sheet until solid. Then, transfer them to an airtight container or freezer bag. They can be stored for up to 2 weeks. When you’re ready to indulge, just thaw them at room temperature, or pop them in the microwave for a few seconds.
What if my dough is too dry?
If your dough seems too dry, do not worry! This can happen due to overly packed flour or lack of moisture. You can add a tablespoon of milk or water to the dough, mixing until you achieve a slightly sticky consistency. If you’re measuring flour, remember to spoon it into the measuring cup rather than scooping directly to avoid overpacking.
Are these cookies suitable for those with allergies?
While the chocolate cherry cookies contain common allergens like eggs and dairy, you can easily adapt the recipe for special diets! Use a flax egg or applesauce as an egg substitute for a vegan version, and swap the butter for coconut oil. Always check the ingredient labels for allergens, especially if sharing with friends or family.
How does ripeness affect the overall flavor of the cookies?
Choosing ripe cherries or high-quality cherry preserves significantly enhances the overall flavor profile of your chocolate cherry cookies. Ripe, juicy cherries will add a natural sweetness and fruitiness that pairs beautifully with the rich chocolate, creating a delightful contrast that’s sure to impress!

Fudgy Chocolate Cherry Cookies for Sweet Moments Together
Ingredients
Equipment
Method
- In a medium bowl, whisk together 1 ¾ cups of all-purpose flour, ¾ cup of Dutch-process cocoa powder, 1 teaspoon of baking powder, and ½ teaspoon of sea salt until well combined.
- Cream together ½ cup of softened unsalted butter, ½ cup of light brown sugar, and ¼ cup of granulated white sugar in a large bowl until light and fluffy.
- Add 2 room temperature egg yolks and 1 teaspoon of vanilla extract to the butter and sugar mixture. Mix until fully combined.
- Gradually blend the dry mixture into the wet ingredients until just combined.
- Scoop the dough into 32 equal-sized balls and place them on a lined baking sheet. Make a small indent in the center of each ball and chill for at least 1 hour.
- Preheat your oven to 350°F (175°C). Bake for 10-12 minutes until edges are set and centers are soft.
- Once baked, cool on the baking sheet for about 5 minutes before transferring to a wire rack.
- Heat ½ cup of heavy cream in a small saucepan until just simmering. Pour over 6 ounces of chopped chocolate and stir until smooth. Incorporate 2 tablespoons of cherry preserves.
- Fill the indents of each cookie with the ganache. Refrigerate for a few minutes to let the ganache set.

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